No. words: 1307; after pruning: 1281


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:729)  550  0.52 0.00 0.00  KSU018_G05_BE499948Ld07P006E04E101F1_035.ab1       32   608 (0)  C KSU019_G05_BE499948Ld07P006E04E101R1_035.ab1   (0)   699   123 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1    KSU018_G05_BE499948Ld07P006E04E101F1_035.ab1     1 
  139  C KSU019_G05_BE499948Ld07P006E04E101R1_035.ab1   592 
  143    KSU018_G05_BE499948Ld07P006E04E101F1_035.ab1   143 
  167  C KSU019_G05_BE499948Ld07P006E04E101R1_035.ab1   564 
  171    KSU018_G05_BE499948Ld07P006E04E101F1_035.ab1   171 
  211  C KSU019_G05_BE499948Ld07P006E04E101R1_035.ab1   520 
Contig length: old 730, new 730

Contig length: old 730, new 730
New start: 0