No. words: 1713; after pruning: 1673


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:729)  700  0.14 0.00 0.27  KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1        1   731 (120)  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   (133)   729     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   862 
  139    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1     6 
  143  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   720 
  163    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1    30 
  191  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   672 
  195    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1    62 
  203  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   660 
  211    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1    78 
  219  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   644 
  227    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1    94 
  259  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   604 
  275    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1   142 
  299  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   564 
  303    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1   170 
  335  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   528 
  743    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1   610 
  751  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1   112 
  799    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1   666 
  803  C KSU019_A06_BE499948Ld09P006E04E101R1_048.ab1    60 
  839    KSU018_A06_BE499948Ld09P006E04E101F1_048.ab1   706 
Contig length: old 983, new 984

Contig length: old 984, new 984
New start: 0