No. words: 1744; after pruning: 1718


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:732)  696  0.00 0.00 0.54  KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1        1   736 (143)  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   (133)   732     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   865 
  139    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1     6 
  143  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   723 
  163    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1    30 
  191  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   675 
  195    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1    62 
  203  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   663 
  211    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1    78 
  219  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   647 
  227    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1    94 
  239  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   627 
  243    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1   110 
  259  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   607 
  275    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1   142 
  283  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   583 
  707    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1   574 
  751  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1   115 
  799    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1   666 
  803  C KSU019_B06_BE499948Ld10P006E04E101R1_046.ab1    63 
  831    KSU018_B06_BE499948Ld10P006E04E101F1_046.ab1   698 
Contig length: old 1011, new 1012

Contig length: old 1012, new 1012
New start: 0