No. words: 1748; after pruning: 1694


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.2 (1,1:734)  705  0.00 0.00 0.27  KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1        1   736 (145)  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   (133)   734     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   867 
  139    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1     6 
  143  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   725 
  159    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1    26 
  263  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   605 
  267    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1   134 
  271  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   597 
  275    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1   142 
  299  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   569 
  303    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1   170 
  335  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   533 
  403    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1   270 
  415  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   453 
  707    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1   574 
  715  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   153 
  743    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1   610 
  751  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1   117 
  843    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1   710 
  847  C KSU019_H06_BE499948Ld16P006E04E101R1_034.ab1    21 
  855    KSU018_H06_BE499948Ld16P006E04E101F1_034.ab1   722 
Contig length: old 1013, new 1014

Contig length: old 1014, new 1014
New start: 0 
S Change at: 898; seg lengths: entry 1, contig 1
S Change at: 942; seg lengths: entry 1, contig 1