No. words: 1514; after pruning: 1488


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.9 (1,1:743)  708  0.00 0.00 0.40  KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1        1   743 (8)  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   (21)   742     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   763 
   25    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1     4 
   43  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   722 
   47    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1    26 
  111  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   654 
  115    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1    94 
  295  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   470 
  299    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1   278 
  307  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   458 
  311    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1   290 
  323  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   442 
  379    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1   358 
  383  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   382 
  387    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1   366 
  391  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   374 
  399    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1   378 
  407  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   358 
  427    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1   406 
  431  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   334 
  467    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1   446 
  471  C KSU003_H06_BE499948Tu01P006E04E101R1_048.ab1   294 
  746    KSU002_H06_BE499948Tu01P006E04E101F1_048.ab1   726 
Contig length: old 770, new 771

Contig length: old 771, new 771
New start: 0