No. words: 1290; after pruning: 1250


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 4.4 (1,1:416)  390  0.25 0.25 0.00  KSU018_D07_BE500634Ld04P006F04F101F1_057.ab1        9   416 (321)  C KSU019_D07_BE500634Ld04P006F04F101R1_057.ab1   (143)   410     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C KSU019_D07_BE500634Ld04P006F04F101R1_057.ab1   553 
  228    KSU018_D07_BE500634Ld04P006F04F101F1_057.ab1    92 
  256  C KSU019_D07_BE500634Ld04P006F04F101R1_057.ab1   298 
  320    KSU018_D07_BE500634Ld04P006F04F101F1_057.ab1   184 
Contig length: old 873, new 873

Contig length: old 873, new 873
New start: 0