No. words: 1811; after pruning: 1785


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.5 (1,1:814)  780  0.00 0.12 0.25  KSU018_H07_BE500634Ld08P006F04F101F1_049.ab1        2   816 (131)  C KSU019_H07_BE500634Ld08P006F04F101R1_049.ab1   (50)   814     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  398 nodes

 201 str. conn. components

Path
    1  C KSU019_H07_BE500634Ld08P006F04F101R1_049.ab1   864 
   63    KSU018_H07_BE500634Ld08P006F04F101F1_049.ab1    13 
  679  C KSU019_H07_BE500634Ld08P006F04F101R1_049.ab1   186 
  699    KSU018_H07_BE500634Ld08P006F04F101F1_049.ab1   649 
  707  C KSU019_H07_BE500634Ld08P006F04F101R1_049.ab1   158 
  847    KSU018_H07_BE500634Ld08P006F04F101F1_049.ab1   797 
Contig length: old 996, new 997

Contig length: old 997, new 997
New start: 0