No. words: 1268; after pruning: 1242


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:829)  416  0.68 0.00 0.00  KSU018_F08_BE500634Ld14P006F04F101F1_054.ab1      223   660 (0)  C KSU019_F08_BE500634Ld14P006F04F101R1_054.ab1   (0)   608   171 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1    KSU018_F08_BE500634Ld14P006F04F101F1_054.ab1     1 
  401  C KSU019_F08_BE500634Ld14P006F04F101R1_054.ab1   430 
  405    KSU018_F08_BE500634Ld14P006F04F101F1_054.ab1   405 
  413  C KSU019_F08_BE500634Ld14P006F04F101R1_054.ab1   418 
  425    KSU018_F08_BE500634Ld14P006F04F101F1_054.ab1   425 
  449  C KSU019_F08_BE500634Ld14P006F04F101R1_054.ab1   382 
  453    KSU018_F08_BE500634Ld14P006F04F101F1_054.ab1   453 
  457  C KSU019_F08_BE500634Ld14P006F04F101R1_054.ab1   374 
Contig length: old 830, new 830

Contig length: old 830, new 830
New start: 0