No. words: 1827; after pruning: 1801


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:812)  768  0.25 0.25 0.25  KSU018_H08_BE500634Ld16P006F04F101F1_050.ab1        2   814 (148)  C KSU019_H08_BE500634Ld16P006F04F101R1_050.ab1   (52)   813     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C KSU019_H08_BE500634Ld16P006F04F101R1_050.ab1   865 
   72    KSU018_H08_BE500634Ld16P006F04F101F1_050.ab1    19 
  283  C KSU019_H08_BE500634Ld16P006F04F101R1_050.ab1   583 
  295    KSU018_H08_BE500634Ld16P006F04F101F1_050.ab1   242 
  665  C KSU019_H08_BE500634Ld16P006F04F101R1_050.ab1   201 
  849    KSU018_H08_BE500634Ld16P006F04F101F1_050.ab1   796 
Contig length: old 1014, new 1015

Contig length: old 1015, new 1015
New start: 0