No. words: 1568; after pruning: 1528


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.2 (1,1:821)  711  0.27 0.00 0.00  KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1        1   734 (0)  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   (12)   822    89 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   834 
   24    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1    12 
   92  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   743 
  100    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1    88 
  195  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   640 
  199    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1   187 
  287  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   548 
  291    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1   279 
  323  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   512 
  327    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1   315 
  331  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   504 
  351    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1   339 
  371  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   464 
  375    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1   363 
  383  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   452 
  391    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1   379 
  400  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   435 
  424    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1   412 
  444  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   391 
  544    KSU002_A07_BE500634Tu01P006F04F101F1_049.ab1   532 
  552  C KSU003_A07_BE500634Tu01P006F04F101R1_049.ab1   283 
Contig length: old 834, new 834

Contig length: old 834, new 834
New start: 0