No. words: 1559; after pruning: 1533


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:838)  700  0.00 0.00 0.00  KSU006_A03_BE500634Tu02P006F04F101F1_017.ab1       32   751 (0)  C KSU007_A03_BE500634Tu02P006F04F101R1_017.ab1   (0)   808    89 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1    KSU006_A03_BE500634Tu02P006F04F101F1_017.ab1     1 
  331  C KSU007_A03_BE500634Tu02P006F04F101R1_017.ab1   509 
  339    KSU006_A03_BE500634Tu02P006F04F101F1_017.ab1   339 
  383  C KSU007_A03_BE500634Tu02P006F04F101R1_017.ab1   457 
  387    KSU006_A03_BE500634Tu02P006F04F101F1_017.ab1   387 
  403  C KSU007_A03_BE500634Tu02P006F04F101R1_017.ab1   437 
  415    KSU006_A03_BE500634Tu02P006F04F101F1_017.ab1   415 
  423  C KSU007_A03_BE500634Tu02P006F04F101R1_017.ab1   417 
  431    KSU006_A03_BE500634Tu02P006F04F101F1_017.ab1   431 
  447  C KSU007_A03_BE500634Tu02P006F04F101R1_017.ab1   393 
Contig length: old 839, new 839

Contig length: old 839, new 839
New start: 0