No. words: 1871; after pruning: 1845


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:1536)  331  0.00 0.00 0.00  KSU050_G03_BE517664Tu02P009G03G091F1_019.ab1      641   974 (0)  C KSU051_G03_BE517664Tu02P009G03G091R1_019.ab1   (0)   897   564 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1    KSU050_G03_BE517664Tu02P009G03G091F1_019.ab1     1 
  744  C KSU051_G03_BE517664Tu02P009G03G091R1_019.ab1   794 
  760    KSU050_G03_BE517664Tu02P009G03G091F1_019.ab1   760 
  764  C KSU051_G03_BE517664Tu02P009G03G091R1_019.ab1   774 
  776    KSU050_G03_BE517664Tu02P009G03G091F1_019.ab1   776 
  784  C KSU051_G03_BE517664Tu02P009G03G091R1_019.ab1   754 
  788    KSU050_G03_BE517664Tu02P009G03G091F1_019.ab1   788 
  796  C KSU051_G03_BE517664Tu02P009G03G091R1_019.ab1   742 
Contig length: old 1537, new 1537

Contig length: old 1537, new 1537
New start: 0