No. words: 1659; after pruning: 1605


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:1010)  615  0.46 0.00 0.31  KSU006_C12_BE591320Tu01P009H03H091F1_086.ab1      172   820 (0)  C KSU007_C12_BE591320Tu01P009H03H091R1_086.ab1   (0)   839   193 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1    KSU006_C12_BE591320Tu01P009H03H091F1_086.ab1     1 
  392  C KSU007_C12_BE591320Tu01P009H03H091R1_086.ab1   621 
  396    KSU006_C12_BE591320Tu01P009H03H091F1_086.ab1   396 
  440  C KSU007_C12_BE591320Tu01P009H03H091R1_086.ab1   573 
  468    KSU006_C12_BE591320Tu01P009H03H091F1_086.ab1   468 
  480  C KSU007_C12_BE591320Tu01P009H03H091R1_086.ab1   533 
  484    KSU006_C12_BE591320Tu01P009H03H091F1_086.ab1   484 
  488  C KSU007_C12_BE591320Tu01P009H03H091R1_086.ab1   525 
Contig length: old 1011, new 1012

Contig length: old 1012, new 1012
New start: 0