No. words: 1859; after pruning: 1833


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.3 (1,1:995)  831  0.23 0.12 0.00  KSU050_H03_BE591320Tu02P009H03H091F1_017.ab1      120   980 (1)  C KSU051_H03_BE591320Tu02P009H03H091R1_017.ab1   (0)   878    17 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  424 nodes

 214 str. conn. components

Path
    1    KSU050_H03_BE591320Tu02P009H03H091F1_017.ab1     1 
  325  C KSU051_H03_BE591320Tu02P009H03H091R1_017.ab1   673 
  337    KSU050_H03_BE591320Tu02P009H03H091F1_017.ab1   337 
  345  C KSU051_H03_BE591320Tu02P009H03H091R1_017.ab1   653 
  585    KSU050_H03_BE591320Tu02P009H03H091F1_017.ab1   585 
  653  C KSU051_H03_BE591320Tu02P009H03H091R1_017.ab1   345 
  945    KSU050_H03_BE591320Tu02P009H03H091F1_017.ab1   945 
  953  C KSU051_H03_BE591320Tu02P009H03H091R1_017.ab1    45 
Contig length: old 996, new 997

Contig length: old 997, new 997
New start: 0