No. words: 888; after pruning: 862


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:301)  302  0.00 0.00 0.00  KSU018_C12_BE591521Ld11P006B05B111F1_092.ab1        1   302 (134)  C KSU019_C12_BE591521Ld11P006B05B111R1_092.ab1   (150)   302     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  152 nodes

 78 str. conn. components

Path
    1  C KSU019_C12_BE591521Ld11P006B05B111R1_092.ab1   452 
  338    KSU018_C12_BE591521Ld11P006B05B111F1_092.ab1   188 
  386  C KSU019_C12_BE591521Ld11P006B05B111R1_092.ab1    67 
  390    KSU018_C12_BE591521Ld11P006B05B111F1_092.ab1   240 
  402  C KSU019_C12_BE591521Ld11P006B05B111R1_092.ab1    51 
  406    KSU018_C12_BE591521Ld11P006B05B111F1_092.ab1   256 
Contig length: old 586, new 586

Contig length: old 586, new 586
New start: 0