No. words: 1361; after pruning: 1335


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.6 (1,1:666)  623  0.00 0.15 0.45  KSU008_G08_BE637255At01P009A04A101F1_056.ab1        1   665 (7)  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   (23)   666     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   689 
   52    KSU008_G08_BE637255At01P009A04A101F1_056.ab1    28 
   60  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   630 
   72    KSU008_G08_BE637255At01P009A04A101F1_056.ab1    48 
  180  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   511 
  184    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   160 
  340  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   351 
  348    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   324 
  356  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   335 
  372    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   348 
  380  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   311 
  396    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   372 
  404  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   287 
  412    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   388 
  420  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   271 
  428    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   404 
  432  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   259 
  448    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   424 
  452  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   239 
  496    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   472 
  500  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   191 
  512    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   488 
  516  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1   175 
  620    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   596 
  628  C KSU009_G08_BE637255At01P009A04A101R1_056.ab1    63 
  648    KSU008_G08_BE637255At01P009A04A101F1_056.ab1   624 
Contig length: old 694, new 696

Contig length: old 696, new 696
New start: 0