No. words: 870; after pruning: 844


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (1,1:418)  383  0.00 0.95 0.24  KSU008_H08_BE637507At01P009B04B101F1_064.ab1        1   419 (21)  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1   (8)   422     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1   430 
   83    KSU008_H08_BE637507At01P009B04B101F1_064.ab1    71 
   91  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1   340 
  151    KSU008_H08_BE637507At01P009B04B101F1_064.ab1   139 
  167  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1   264 
  171    KSU008_H08_BE637507At01P009B04B101F1_064.ab1   159 
  179  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1   252 
  187    KSU008_H08_BE637507At01P009B04B101F1_064.ab1   175 
  195  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1   236 
  207    KSU008_H08_BE637507At01P009B04B101F1_064.ab1   195 
  211  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1   220 
  223    KSU008_H08_BE637507At01P009B04B101F1_064.ab1   211 
  287  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1   144 
  299    KSU008_H08_BE637507At01P009B04B101F1_064.ab1   287 
  311  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1   120 
  315    KSU008_H08_BE637507At01P009B04B101F1_064.ab1   303 
  355  C KSU009_H08_BE637507At01P009B04B101R1_064.ab1    76 
  359    KSU008_H08_BE637507At01P009B04B101F1_064.ab1   347 
Contig length: old 451, new 452

Contig length: old 452, new 452
New start: 0