No. words: 1492; after pruning: 1466


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    9   -5.1 -5.1 (1,1:609)  436  7.36 0.33 0.17  KSU050_C10_BE637729As02P009C04C0101F1_076.ab1        4   601 (147)  C KSU051_C10_BE637729As02P009C04C0101R1_076.ab1   (136)   608    10 *
  Worst pair: offset 0 
LLR breakdown: discreps: -17.0 (<20 part: -17.0 (#=47), >20:0.0 (#=0); in HQ: -17.0, out HQ 0.0), match: 12.3  trail: -0.3  lead: -0.2  total: -5.2  436  7.36 0.33 0.17  KSU050_C10_BE637729As02P009C04C0101F1_076.ab1        4   601 (147)  C KSU051_C10_BE637729As02P009C04C0101R1_076.ab1   (136)   608    10 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.1       0        1

Gap   # merges  # failures
 size
 9       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    KSU051_C10_BE637729As02P009C04C0101R1_076.ab1     1 
Contig length: old 744, new 744

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    KSU050_C10_BE637729As02P009C04C0101F1_076.ab1     1 
Contig length: old 748, new 748