No. words: 1269; after pruning: 1243


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 10.6 (1,1:603)  571  0.00 0.17 0.00  KSU050_C04_BE637729Tu02P009C04C0101F1_028.ab1        2   595 (36)  C KSU051_C04_BE637729Tu02P009C04C0101R1_028.ab1   (34)   604    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C KSU051_C04_BE637729Tu02P009C04C0101R1_028.ab1   638 
   57    KSU050_C04_BE637729Tu02P009C04C0101F1_028.ab1    23 
   61  C KSU051_C04_BE637729Tu02P009C04C0101R1_028.ab1   578 
   65    KSU050_C04_BE637729Tu02P009C04C0101F1_028.ab1    31 
  537  C KSU051_C04_BE637729Tu02P009C04C0101R1_028.ab1   102 
  605    KSU050_C04_BE637729Tu02P009C04C0101F1_028.ab1   571 
  621  C KSU051_C04_BE637729Tu02P009C04C0101R1_028.ab1    18 
  625    KSU050_C04_BE637729Tu02P009C04C0101F1_028.ab1   591 
Contig length: old 665, new 665

Contig length: old 665, new 665
New start: 0