No. words: 1636; after pruning: 1596


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 0.0 (1,1:1570)   62  0.00 0.00 0.00  KSU045_E11_BE638039Ld01P006D05D111F2_087.ab1      744   805 (3)  C KSU046_E11_BE638039Ld01P006D05D111R2_087.ab1   (0)   828   767 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  32 nodes

 18 str. conn. components

Path
    1    KSU045_E11_BE638039Ld01P006D05D111F2_087.ab1     1 
  767  C KSU046_E11_BE638039Ld01P006D05D111R2_087.ab1   805 
  771    KSU045_E11_BE638039Ld01P006D05D111F2_087.ab1   771 
  795  C KSU046_E11_BE638039Ld01P006D05D111R2_087.ab1   777 
Contig length: old 1571, new 1571

Contig length: old 1571, new 1571
New start: 0 
S Change at: 819; seg lengths: entry 1, contig 1