No. words: 1680; after pruning: 1612


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.5 (1,1:1565)  113  0.00 0.00 0.00  KSU045_A12_BE638039Ld06P006D05D111F2_096.ab1      691   804 (0)  C KSU046_A12_BE638039Ld06P006D05D111R2_096.ab1   (0)   876   763 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  58 nodes

 31 str. conn. components

Path
    1    KSU045_A12_BE638039Ld06P006D05D111F2_096.ab1     1 
  762  C KSU046_A12_BE638039Ld06P006D05D111R2_096.ab1   805 
  770    KSU045_A12_BE638039Ld06P006D05D111F2_096.ab1   770 
  798  C KSU046_A12_BE638039Ld06P006D05D111R2_096.ab1   769 
Contig length: old 1566, new 1566

Contig length: old 1566, new 1566
New start: 0 
S Change at: 814; seg lengths: entry 1, contig 1
S Change at: 872; seg lengths: entry 1, contig 1
S Change at: 911; seg lengths: entry 1, contig 1