No. words: 1601; after pruning: 1547


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.0 (1,1:1554)   46  0.00 0.00 0.00  KSU045_C12_BE638039Ld10P006D05D111F2_092.ab1      758   803 (0)  C KSU046_C12_BE638039Ld10P006D05D111R2_092.ab1   (0)   798   753 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  24 nodes

 14 str. conn. components

Path
    1    KSU045_C12_BE638039Ld10P006D05D111F2_092.ab1     1 
  763  C KSU046_C12_BE638039Ld10P006D05D111R2_092.ab1   793 
  767    KSU045_C12_BE638039Ld10P006D05D111F2_092.ab1   767 
  799  C KSU046_C12_BE638039Ld10P006D05D111R2_092.ab1   757 
Contig length: old 1555, new 1555

Contig length: old 1555, new 1555
New start: 0 
S Change at: 813; seg lengths: entry 1, contig 1
S Change at: 910; seg lengths: entry 1, contig 1