No. words: 1008; after pruning: 982


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:476)  457  0.00 0.00 0.21  KSU006_F07_BF145268As01P009D04D101F1_059.ab1        1   477 (26)  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   (29)   476     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   505 
  101    KSU006_F07_BF145268As01P009D04D101F1_059.ab1    72 
  105  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   401 
  137    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   108 
  145  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   361 
  177    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   148 
  185  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   321 
  189    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   160 
  193  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   313 
  201    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   172 
  209  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   297 
  217    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   188 
  237  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   269 
  253    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   224 
  261  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   245 
  285    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   256 
  305  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   201 
  333    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   304 
  341  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1   165 
  381    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   352 
  425  C KSU007_F07_BF145268As01P009D04D101R1_059.ab1    81 
  433    KSU006_F07_BF145268As01P009D04D101F1_059.ab1   404 
Contig length: old 531, new 532

Contig length: old 532, new 532
New start: 0