No. words: 1017; after pruning: 991


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:462)  443  0.00 0.00 0.22  KSU050_D10_BF145268As02P009D04D0101F1_074.ab1        1   463 (45)  C KSU051_D10_BF145268As02P009D04D0101R1_074.ab1   (47)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C KSU051_D10_BF145268As02P009D04D0101R1_074.ab1   509 
  108    KSU050_D10_BF145268As02P009D04D0101F1_074.ab1    61 
  112  C KSU051_D10_BF145268As02P009D04D0101R1_074.ab1   398 
  136    KSU050_D10_BF145268As02P009D04D0101F1_074.ab1    89 
  140  C KSU051_D10_BF145268As02P009D04D0101R1_074.ab1   370 
  164    KSU050_D10_BF145268As02P009D04D0101F1_074.ab1   117 
  176  C KSU051_D10_BF145268As02P009D04D0101R1_074.ab1   334 
  196    KSU050_D10_BF145268As02P009D04D0101F1_074.ab1   149 
Contig length: old 554, new 555

Contig length: old 555, new 555
New start: 0