No. words: 1014; after pruning: 988


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:477)  460  0.00 0.00 0.00  KSU008_B09_BF145268At01P009D04D101F1_073.ab1        1   478 (31)  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   (27)   478     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   505 
   90    KSU008_B09_BF145268At01P009D04D101F1_073.ab1    63 
   94  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   412 
  118    KSU008_B09_BF145268At01P009D04D101F1_073.ab1    91 
  130  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   376 
  134    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   107 
  138  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   368 
  166    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   139 
  174  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   332 
  178    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   151 
  182  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   324 
  186    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   159 
  190  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   316 
  210    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   183 
  230  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   276 
  254    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   227 
  258  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   248 
  262    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   235 
  354  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   152 
  390    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   363 
  402  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1   104 
  410    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   383 
  430  C KSU009_B09_BF145268At01P009D04D101R1_073.ab1    76 
  434    KSU008_B09_BF145268At01P009D04D101F1_073.ab1   407 
Contig length: old 536, new 536

Contig length: old 536, new 536
New start: 0