No. words: 1027; after pruning: 1001


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:474)  458  0.00 0.00 0.00  KSU008_A05_BF145268At02P009D04D101F1_033.ab1        1   475 (47)  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   (30)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   505 
  101    KSU008_A05_BF145268At02P009D04D101F1_033.ab1    71 
  105  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   401 
  125    KSU008_A05_BF145268At02P009D04D101F1_033.ab1    95 
  133  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   373 
  137    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   107 
  157  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   349 
  185    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   155 
  189  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   317 
  201    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   171 
  209  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   297 
  225    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   195 
  237  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   269 
  277    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   247 
  285  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   221 
  337    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   307 
  341  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   165 
  353    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   323 
  357  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   149 
  365    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   335 
  373  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   133 
  385    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   355 
  389  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1   117 
  393    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   363 
  409  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1    97 
  417    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   387 
  433  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1    73 
  441    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   411 
  481  C KSU009_A05_BF145268At02P009D04D101R1_033.ab1    25 
  485    KSU008_A05_BF145268At02P009D04D101F1_033.ab1   455 
Contig length: old 552, new 552

Contig length: old 552, new 552
New start: 0