No. words: 1007; after pruning: 981


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:455)  432  0.00 0.00 0.44  KSU050_D04_BF145268Tu02P009D04D0101F1_026.ab1        1   457 (37)  C KSU051_D04_BF145268Tu02P009D04D0101R1_026.ab1   (58)   455     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C KSU051_D04_BF145268Tu02P009D04D0101R1_026.ab1   513 
  138    KSU050_D04_BF145268Tu02P009D04D0101F1_026.ab1    80 
  146  C KSU051_D04_BF145268Tu02P009D04D0101R1_026.ab1   368 
  394    KSU050_D04_BF145268Tu02P009D04D0101F1_026.ab1   336 
Contig length: old 551, new 552

Contig length: old 552, new 552
New start: 0