No. words: 1565; after pruning: 1539


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.7 (1,1:1254)  280  0.97 0.00 0.32  KSU008_A01_BF200627Tu01P009E04E101F1_001.ab1      476   785 (0)  C KSU009_A01_BF200627Tu01P009E04E101R1_001.ab1   (0)   780   472 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1    KSU008_A01_BF200627Tu01P009E04E101F1_001.ab1     1 
  602  C KSU009_A01_BF200627Tu01P009E04E101R1_001.ab1   654 
  606    KSU008_A01_BF200627Tu01P009E04E101F1_001.ab1   606 
  634  C KSU009_A01_BF200627Tu01P009E04E101R1_001.ab1   622 
  670    KSU008_A01_BF200627Tu01P009E04E101F1_001.ab1   670 
  678  C KSU009_A01_BF200627Tu01P009E04E101R1_001.ab1   578 
Contig length: old 1255, new 1255

Contig length: old 1255, new 1255
New start: 0