No. words: 897; after pruning: 871


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 4.6 (1,1:296)  286  0.00 0.00 0.34  KSU016_B03_BF202695Ld02P006E05E111F1_029.ab1        1   296 (131)  C KSU017_B03_BF202695Ld02P006E05E111R1_029.ab1   (174)   296     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  148 nodes

 76 str. conn. components

Path
    1  C KSU017_B03_BF202695Ld02P006E05E111R1_029.ab1   470 
  250    KSU016_B03_BF202695Ld02P006E05E111F1_029.ab1    76 
  262  C KSU017_B03_BF202695Ld02P006E05E111R1_029.ab1   209 
  286    KSU016_B03_BF202695Ld02P006E05E111F1_029.ab1   112 
  310  C KSU017_B03_BF202695Ld02P006E05E111R1_029.ab1   161 
  330    KSU016_B03_BF202695Ld02P006E05E111F1_029.ab1   156 
  338  C KSU017_B03_BF202695Ld02P006E05E111R1_029.ab1   133 
  342    KSU016_B03_BF202695Ld02P006E05E111F1_029.ab1   168 
Contig length: old 600, new 601

Contig length: old 601, new 601
New start: 0