No. words: 907; after pruning: 881


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 4.4 (1,1:302)  292  0.00 0.00 0.33  KSU016_F03_BF202695Ld06P006E05E111F1_021.ab1        1   301 (158)  C KSU017_F03_BF202695Ld06P006E05E111R1_021.ab1   (146)   302     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  150 nodes

 77 str. conn. components

Path
    1  C KSU017_F03_BF202695Ld06P006E05E111R1_021.ab1   448 
  202    KSU016_F03_BF202695Ld06P006E05E111F1_021.ab1    56 
  206  C KSU017_F03_BF202695Ld06P006E05E111R1_021.ab1   243 
  254    KSU016_F03_BF202695Ld06P006E05E111F1_021.ab1   108 
  258  C KSU017_F03_BF202695Ld06P006E05E111R1_021.ab1   191 
  266    KSU016_F03_BF202695Ld06P006E05E111F1_021.ab1   120 
  286  C KSU017_F03_BF202695Ld06P006E05E111R1_021.ab1   163 
  306    KSU016_F03_BF202695Ld06P006E05E111F1_021.ab1   160 
Contig length: old 604, new 605

Contig length: old 605, new 605
New start: 0