No. words: 1752; after pruning: 1670


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.1 (1,1:936)  776  0.74 0.12 0.00  KSU016_A05_BF478571Ld01P006G05G111F1_047.ab1       38   851 (0)  C KSU017_A05_BF478571Ld01P006G05G111R1_047.ab1   (0)   901    87 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1    KSU016_A05_BF478571Ld01P006G05G111F1_047.ab1     1 
  428  C KSU017_A05_BF478571Ld01P006G05G111R1_047.ab1   510 
Contig length: old 937, new 937

Contig length: old 937, new 937
New start: 0