No. words: 1625; after pruning: 1571


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:837)  751  0.25 0.13 0.13  KSU016_B05_BF478571Ld02P006G05G111F1_045.ab1       12   798 (0)  C KSU017_B05_BF478571Ld02P006G05G111R1_045.ab1   (0)   827    41 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1    KSU016_B05_BF478571Ld02P006G05G111F1_045.ab1     1 
  338  C KSU017_B05_BF478571Ld02P006G05G111R1_045.ab1   501 
Contig length: old 838, new 838

Contig length: old 838, new 838
New start: 0