No. words: 1809; after pruning: 1769


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 17.1 (1,1:835)  803  0.12 0.12 0.00  KSU016_D05_BF478571Ld04P006G05G111F1_041.ab1        4   836 (92)  C KSU017_D05_BF478571Ld04P006G05G111R1_041.ab1   (47)   834     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  412 nodes

 208 str. conn. components

Path
    1  C KSU017_D05_BF478571Ld04P006G05G111R1_041.ab1   881 
   63    KSU016_D05_BF478571Ld04P006G05G111F1_041.ab1    18 
  655  C KSU017_D05_BF478571Ld04P006G05G111R1_041.ab1   227 
  691    KSU016_D05_BF478571Ld04P006G05G111F1_041.ab1   646 
  699  C KSU017_D05_BF478571Ld04P006G05G111R1_041.ab1   183 
  876    KSU016_D05_BF478571Ld04P006G05G111F1_041.ab1   831 
Contig length: old 973, new 973

Contig length: old 973, new 973
New start: 0