No. words: 1581; after pruning: 1555


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:844)  714  0.00 0.00 0.00  KSU016_F05_BF478571Ld06P006G05G111F1_037.ab1       58   793 (0)  C KSU017_F05_BF478571Ld06P006G05G111R1_037.ab1   (0)   788    53 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1    KSU016_F05_BF478571Ld06P006G05G111F1_037.ab1     1 
   89  C KSU017_F05_BF478571Ld06P006G05G111R1_037.ab1   757 
   93    KSU016_F05_BF478571Ld06P006G05G111F1_037.ab1    93 
  333  C KSU017_F05_BF478571Ld06P006G05G111R1_037.ab1   513 
Contig length: old 845, new 845

Contig length: old 845, new 845
New start: 0