No. words: 1837; after pruning: 1783


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 17.1 (1,1:957)  823  0.92 0.11 0.00  KSU016_A06_BF478571Ld09P006G05G111F1_048.ab1       43   916 (0)  C KSU017_A06_BF478571Ld09P006G05G111R1_048.ab1   (4)   917    43 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  422 nodes

 213 str. conn. components

Path
    1    KSU016_A06_BF478571Ld09P006G05G111F1_048.ab1     1 
  597  C KSU017_A06_BF478571Ld09P006G05G111R1_048.ab1   363 
Contig length: old 958, new 959

Contig length: old 959, new 959
New start: 0