No. words: 1709; after pruning: 1683


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 17.3 (1,1:868)  763  0.00 0.13 0.00  KSU016_B06_BF478571Ld10P006G05G111F1_046.ab1        4   796 (0)  C KSU017_B06_BF478571Ld10P006G05G111R1_046.ab1   (46)   867    74 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C KSU017_B06_BF478571Ld10P006G05G111R1_046.ab1   913 
   50    KSU016_B06_BF478571Ld10P006G05G111F1_046.ab1     7 
   54  C KSU017_B06_BF478571Ld10P006G05G111R1_046.ab1   860 
   63    KSU016_B06_BF478571Ld10P006G05G111F1_046.ab1    19 
  643  C KSU017_B06_BF478571Ld10P006G05G111R1_046.ab1   271 
Contig length: old 913, new 913

Contig length: old 913, new 913
New start: 0