No. words: 1529; after pruning: 1503


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:948)  546  1.03 0.00 0.00  KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1      201   780 (0)  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   (0)   749   170 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1    KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1     1 
  415  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   535 
  443    KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1   443 
  451  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   499 
  455    KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1   455 
  471  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   479 
  475    KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1   475 
  486  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   464 
  494    KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1   494 
  505  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   445 
  517    KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1   517 
  521  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   429 
  529    KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1   529 
  533  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   417 
  537    KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1   537 
  545  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   405 
  549    KSU016_C06_BF478571Ld11P006G05G111F1_044.ab1   549 
  553  C KSU017_C06_BF478571Ld11P006G05G111R1_044.ab1   397 
Contig length: old 949, new 949

Contig length: old 949, new 949
New start: 0