No. words: 1619; after pruning: 1593


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.4 (1,1:835)  758  0.00 0.00 0.00  KSU016_D06_BF478571Ld12P006G05G111F1_042.ab1       14   796 (0)  C KSU017_D06_BF478571Ld12P006G05G111R1_042.ab1   (0)   823    41 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  394 nodes

 199 str. conn. components

Path
    1    KSU016_D06_BF478571Ld12P006G05G111F1_042.ab1     1 
   17  C KSU017_D06_BF478571Ld12P006G05G111R1_042.ab1   820 
   21    KSU016_D06_BF478571Ld12P006G05G111F1_042.ab1    21 
  649  C KSU017_D06_BF478571Ld12P006G05G111R1_042.ab1   188 
Contig length: old 836, new 836

Contig length: old 836, new 836
New start: 0