No. words: 1798; after pruning: 1772


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.8 (1,1:848)  801  0.00 0.35 0.24  KSU016_E06_BF478571Ld13P006G05G111F1_040.ab1        1   849 (60)  C KSU017_E06_BF478571Ld13P006G05G111R1_040.ab1   (39)   850     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  412 nodes

 208 str. conn. components

Path
    1  C KSU017_E06_BF478571Ld13P006G05G111R1_040.ab1   889 
   63    KSU016_E06_BF478571Ld13P006G05G111F1_040.ab1    22 
  644  C KSU017_E06_BF478571Ld13P006G05G111R1_040.ab1   246 
  876    KSU016_E06_BF478571Ld13P006G05G111F1_040.ab1   835 
Contig length: old 949, new 950

Contig length: old 950, new 950
New start: 0