No. words: 1700; after pruning: 1646


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:844)  791  0.60 0.12 0.12  KSU016_G06_BF478571Ld15P006G05G111F1_036.ab1       11   846 (18)  C KSU017_G06_BF478571Ld15P006G05G111R1_036.ab1   (0)   836     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1    KSU016_G06_BF478571Ld15P006G05G111F1_036.ab1     1 
  546  C KSU017_G06_BF478571Ld15P006G05G111R1_036.ab1   300 
  840    KSU016_G06_BF478571Ld15P006G05G111F1_036.ab1   841 
Contig length: old 864, new 863

Contig length: old 863, new 865
New start: 0 
I Change at: 16; seg lengths: entry 1, contig 0
I Change at: 837; seg lengths: entry 1, contig 0