No. words: 1716; after pruning: 1676


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:857)  789  1.30 0.00 0.00  KSU016_H06_BF478571Ld16P006G05G111F1_034.ab1       14   858 (13)  C KSU017_H06_BF478571Ld16P006G05G111R1_034.ab1   (0)   845     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  410 nodes

 207 str. conn. components

Path
    1    KSU016_H06_BF478571Ld16P006G05G111F1_034.ab1     1 
  611  C KSU017_H06_BF478571Ld16P006G05G111R1_034.ab1   248 
  850    KSU016_H06_BF478571Ld16P006G05G111F1_034.ab1   850 
Contig length: old 871, new 871

Contig length: old 871, new 871
New start: 0