No. words: 1338; after pruning: 1312


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:995)  319  1.17 0.00 0.00  KSU006_H03_BF478571Tu02P006G05G111F1_028.ab1      293   634 (0)  C KSU007_H03_BF478571Tu02P006G05G111R1_028.ab1   (0)   704   363 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  160 nodes

 82 str. conn. components

Path
    1    KSU006_H03_BF478571Tu02P006G05G111F1_028.ab1     1 
  419  C KSU007_H03_BF478571Tu02P006G05G111R1_028.ab1   578 
  427    KSU006_H03_BF478571Tu02P006G05G111F1_028.ab1   427 
  447  C KSU007_H03_BF478571Tu02P006G05G111R1_028.ab1   550 
  467    KSU006_H03_BF478571Tu02P006G05G111F1_028.ab1   467 
  475  C KSU007_H03_BF478571Tu02P006G05G111R1_028.ab1   522 
  483    KSU006_H03_BF478571Tu02P006G05G111F1_028.ab1   483 
  491  C KSU007_H03_BF478571Tu02P006G05G111R1_028.ab1   506 
  507    KSU006_H03_BF478571Tu02P006G05G111F1_028.ab1   507 
  511  C KSU007_H03_BF478571Tu02P006G05G111R1_028.ab1   486 
Contig length: old 996, new 996

Contig length: old 996, new 996
New start: 0