No. words: 820; after pruning: 794


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.5 (1,1:248)  230  0.00 0.80 0.80  KSU016_D07_BF478884Ld04P006H05H111F1_057.ab1        1   250 (150)  C KSU017_D07_BF478884Ld04P006H05H111R1_057.ab1   (170)   250     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  112 nodes

 58 str. conn. components

Path
    1  C KSU017_D07_BF478884Ld04P006H05H111R1_057.ab1   420 
  300    KSU016_D07_BF478884Ld04P006H05H111F1_057.ab1   128 
  304  C KSU017_D07_BF478884Ld04P006H05H111R1_057.ab1   117 
  328    KSU016_D07_BF478884Ld04P006H05H111F1_057.ab1   156 
  344  C KSU017_D07_BF478884Ld04P006H05H111R1_057.ab1    77 
  348    KSU016_D07_BF478884Ld04P006H05H111F1_057.ab1   176 
Contig length: old 571, new 572

Contig length: old 572, new 572
New start: 0