No. words: 1664; after pruning: 1596


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:1113)  523  0.36 0.00 0.18  KSU016_A09_BF482960Ld01P006A06A121F1_079.ab1      303   852 (0)  C KSU017_A09_BF482960Ld01P006A06A121R1_079.ab1   (0)   812   264 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    KSU016_A09_BF482960Ld01P006A06A121F1_079.ab1     1 
  549  C KSU017_A09_BF482960Ld01P006A06A121R1_079.ab1   566 
Contig length: old 1114, new 1114

Contig length: old 1114, new 1114
New start: 0