No. words: 1385; after pruning: 1359


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:1133)  229  0.80 0.40 0.40  KSU016_C09_BF482960Ld03P006A06A121F1_075.ab1      476   726 (0)  C KSU017_C09_BF482960Ld03P006A06A121R1_075.ab1   (0)   659   409 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  116 nodes

 60 str. conn. components

Path
    1    KSU016_C09_BF482960Ld03P006A06A121F1_075.ab1     1 
  555  C KSU017_C09_BF482960Ld03P006A06A121R1_075.ab1   580 
Contig length: old 1134, new 1134

Contig length: old 1134, new 1134
New start: 0