No. words: 1710; after pruning: 1656


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:1109)  570  0.33 0.00 0.17  KSU016_E09_BF482960Ld05P006A06A121F1_071.ab1      246   845 (0)  C KSU017_E09_BF482960Ld05P006A06A121R1_071.ab1   (0)   865   267 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1    KSU016_E09_BF482960Ld05P006A06A121F1_071.ab1     1 
  563  C KSU017_E09_BF482960Ld05P006A06A121R1_071.ab1   549 
Contig length: old 1110, new 1111

Contig length: old 1111, new 1111
New start: 0