No. words: 617; after pruning: 591


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.3 (1,1:273)  271  0.00 0.00 0.00  KSU006_C04_BF483405Tu02P006B06B121F1_022.ab1        1   272 (37)  C KSU007_C04_BF483405Tu02P006B06B121R1_022.ab1   (34)   274     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1  C KSU007_C04_BF483405Tu02P006B06B121R1_022.ab1   308 
   86    KSU006_C04_BF483405Tu02P006B06B121F1_022.ab1    52 
   90  C KSU007_C04_BF483405Tu02P006B06B121R1_022.ab1   219 
   94    KSU006_C04_BF483405Tu02P006B06B121F1_022.ab1    60 
  102  C KSU007_C04_BF483405Tu02P006B06B121R1_022.ab1   207 
  138    KSU006_C04_BF483405Tu02P006B06B121F1_022.ab1   104 
  142  C KSU007_C04_BF483405Tu02P006B06B121R1_022.ab1   167 
  154    KSU006_C04_BF483405Tu02P006B06B121F1_022.ab1   120 
  194  C KSU007_C04_BF483405Tu02P006B06B121R1_022.ab1   115 
  226    KSU006_C04_BF483405Tu02P006B06B121F1_022.ab1   192 
  266  C KSU007_C04_BF483405Tu02P006B06B121R1_022.ab1    43 
  278    KSU006_C04_BF483405Tu02P006B06B121F1_022.ab1   244 
Contig length: old 343, new 343

Contig length: old 343, new 343
New start: 0