No. words: 1019; after pruning: 993


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.0 (1,1:488)  465  0.00 0.21 0.00  KSU004_A11_BF483640As02P006C06C121F1_081.ab1        3   488 (25)  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   (19)   487     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   506 
   47    KSU004_A11_BF483640As02P006C06C121F1_081.ab1    30 
   95  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   412 
  103    KSU004_A11_BF483640As02P006C06C121F1_081.ab1    86 
  111  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   396 
  115    KSU004_A11_BF483640As02P006C06C121F1_081.ab1    98 
  119  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   388 
  131    KSU004_A11_BF483640As02P006C06C121F1_081.ab1   114 
  171  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   336 
  179    KSU004_A11_BF483640As02P006C06C121F1_081.ab1   162 
  207  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   300 
  215    KSU004_A11_BF483640As02P006C06C121F1_081.ab1   198 
  219  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   288 
  235    KSU004_A11_BF483640As02P006C06C121F1_081.ab1   218 
  331  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   176 
  335    KSU004_A11_BF483640As02P006C06C121F1_081.ab1   318 
  347  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   160 
  351    KSU004_A11_BF483640As02P006C06C121F1_081.ab1   334 
  379  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   128 
  383    KSU004_A11_BF483640As02P006C06C121F1_081.ab1   366 
  391  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1   116 
  399    KSU004_A11_BF483640As02P006C06C121F1_081.ab1   382 
  494  C KSU005_A11_BF483640As02P006C06C121R1_081.ab1    12 
  502    KSU004_A11_BF483640As02P006C06C121F1_081.ab1   485 
Contig length: old 530, new 530

Contig length: old 530, new 530
New start: 0