No. words: 1235; after pruning: 1209


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:462)  441  0.00 0.00 0.22  KSU016_A11_BF483640Ld01P006C06C121F1_095.ab1        1   463 (140)  C KSU017_A11_BF483640Ld01P006C06C121R1_095.ab1   (170)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C KSU017_A11_BF483640Ld01P006C06C121R1_095.ab1   632 
  270    KSU016_A11_BF483640Ld01P006C06C121F1_095.ab1   100 
  310  C KSU017_A11_BF483640Ld01P006C06C121R1_095.ab1   323 
  478    KSU016_A11_BF483640Ld01P006C06C121F1_095.ab1   308 
  526  C KSU017_A11_BF483640Ld01P006C06C121R1_095.ab1   107 
  562    KSU016_A11_BF483640Ld01P006C06C121F1_095.ab1   392 
Contig length: old 772, new 773

Contig length: old 773, new 773
New start: 0