No. words: 1242; after pruning: 1216


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:468)  438  0.00 0.21 0.43  KSU016_B11_BF483640Ld02P006C06C121F1_093.ab1        1   470 (133)  C KSU017_B11_BF483640Ld02P006C06C121R1_093.ab1   (170)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C KSU017_B11_BF483640Ld02P006C06C121R1_093.ab1   639 
  484    KSU016_B11_BF483640Ld02P006C06C121F1_093.ab1   313 
  528  C KSU017_B11_BF483640Ld02P006C06C121R1_093.ab1   112 
  556    KSU016_B11_BF483640Ld02P006C06C121F1_093.ab1   385 
Contig length: old 773, new 774

Contig length: old 774, new 774
New start: 0